IL_5MMI_125

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGG*CCAUCAGUGAGAUACC

Length

22 nucleotides

Bulged bases

5MMI|1|A|C|2175, 5MMI|1|A|A|2179, 5MMI|1|A|U|2186

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_125 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.1285

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5MMI|1|A|G|2137
5MMI|1|A|G|2138
5MMI|1|A|A|2139
5MMI|1|A|A|2140
5MMI|1|A|G|2141
5MMI|1|A|G|2142
*
5MMI|1|A|C|2174
5MMI|1|A|C|2175
5MMI|1|A|A|2176
5MMI|1|A|U|2177
5MMI|1|A|C|2178
5MMI|1|A|A|2179
5MMI|1|A|G|2180
5MMI|1|A|U|2181
5MMI|1|A|G|2182
5MMI|1|A|A|2183
5MMI|1|A|G|2184
5MMI|1|A|A|2185
5MMI|1|A|U|2186
5MMI|1|A|A|2187
5MMI|1|A|C|2188
5MMI|1|A|C|2189

Current chains

Chain A

23S ribosomal RNA

Nearby chains