IL_5MMI_130

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAGAAG*CCGAG

Length

13 nucleotides

Bulged bases

5MMI|1|A|A|2145, 5MMI|1|A|A|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MMI_130 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.1349

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5MMI|1|A|C|2143
5MMI|1|A|G|2144
5MMI|1|A|A|2145
5MMI|1|A|A|2146
5MMI|1|A|G|2147
5MMI|1|A|A|2148
5MMI|1|A|A|2149
5MMI|1|A|G|2150
*
5MMI|1|A|C|2169
5MMI|1|A|C|2170
5MMI|1|A|G|2171
5MMI|1|A|A|2172
5MMI|1|A|G|2173

Current chains

Chain A

23S ribosomal RNA

Nearby chains