IL_5MQ0_001
3D structure
- PDB id
- 5MQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a spliceosome remodeled for exon ligation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.17 Å
Loop
- Sequence
- GU*AAC
- Length
- 5 nucleotides
- Bulged bases
- 5MQ0|1|I|A|70
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MQ0_001 not in the Motif Atlas
- Geometric match to IL_5TBW_123
- Geometric discrepancy: 0.3114
- The information below is about IL_5TBW_123
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5MQ0|1|2|G|34
5MQ0|1|2|U|35
*
5MQ0|1|I|A|69
5MQ0|1|I|A|70
5MQ0|1|I|C|71
Current chains
- Chain 2
- S.cerevisiae chromosome II reading frame ORF YBR230c
- Chain I
- Yeast UBC4 gene for ubiquitin-conjugating enzyme
Nearby chains
- Chain 6
- U6 spliceosomal RNA; U6 snRNA
- Chain A
- Pre-mRNA-splicing factor 8
- Chain O
- Pre-mRNA-splicing factor CEF1
Coloring options: