5MQ0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5MQ0_002 | 1/5/93:101 | No text annotation | ||
| HL_5MQ0_003 | 1/6/70:76 | GNRA | homologous HL_6ASO_001 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5MQ0_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5MQ0_015 | 1/2/23:26, 1/6/58:59 | No text annotation | ||
| IL_5MQ0_002 | 1/2/39:42, 1/I/62:65 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_71194.1 | |
| IL_5MQ0_008 | 1/5/32:34, 1/5/120:121 | No text annotation | ||
| IL_5MQ0_009 | 1/5/80:84, 1/5/110:112 | No text annotation | ||
| IL_5MQ0_010 | 1/5/91:93, 1/5/101:103 | No text annotation | ||
| IL_5MQ0_012 | 1/6/65:67, 1/6/81:82 | Single bulged C | geometric IL_7KGA_004 NA | |
| IL_5MQ0_013 | 1/6/67:68, 1/6/78:81 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5MQ0_014 | No text annotation | ||
| IL_5MQ0_001 | Single bulged A | ||
| IL_5MQ0_003 | No text annotation | ||
| IL_5MQ0_004 | No text annotation | ||
| IL_5MQ0_005 | No text annotation | ||
| IL_5MQ0_006 | No text annotation | ||
| IL_5MQ0_007 | No text annotation | ||
| IL_5MQ0_016 | No text annotation | ||
| IL_5MQ0_011 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5MQ0_002 | 1/2/12:21, 1/6/61:63, 1/6/84:93 | No text annotation | ||
| J3_5MQ0_001 | 1/5/40:46, 1/5/69:79, 1/5/113:114 | No text annotation |
Problematic loops
No problematic loops
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