IL_5MQ0_006

3D structure

PDB id

5MQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a spliceosome remodeled for exon ligation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CUCGCAG*CUG

Length

10 nucleotides

Bulged bases

5MQ0|1|2|C|1107, 5MQ0|1|2|A|1108

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MQ0|1|2|C|1103
5MQ0|1|2|U|1104
5MQ0|1|2|C|1105
5MQ0|1|2|G|1106
5MQ0|1|2|C|1107
5MQ0|1|2|A|1108
5MQ0|1|2|G|1117
*
5MQ0|1|2|C|1128
5MQ0|1|2|U|1129
5MQ0|1|2|G|1138

Current chains

Chain 2

S.cerevisiae chromosome II reading frame ORF YBR230c

Nearby chains

Chain Y

U2 small nuclear ribonucleoprotein B''

Chain n

Small nuclear ribonucleoprotein Sm D3