IL_5MQ0_011
3D structure
- PDB id
- 5MQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a spliceosome remodeled for exon ligation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.17 Å
Loop
- Sequence
- AUA*UCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MQ0_011 not in the Motif Atlas
- Geometric match to IL_4KYY_003
- Geometric discrepancy: 0.0981
- The information below is about IL_4KYY_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 95
Unit IDs
5MQ0|1|6|A|45
5MQ0|1|6|U|46
5MQ0|1|6|A|47
*
5MQ0|1|I|U|6
5MQ0|1|I|C|7
5MQ0|1|I|U|8
Current chains
- Chain 6
- Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence
- Chain I
- Yeast UBC4 gene for ubiquitin-conjugating enzyme
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain M
- Pre-mRNA-splicing factor CWC2
- Chain O
- Pre-mRNA-splicing factor CEF1
- Chain o
- Pre-mRNA-processing factor 17
Coloring options: