IL_5MRC_055

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5MRC|1|A|A|1800, 5MRC|1|A|A|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRC_055 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1802

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5MRC|1|A|U|1749
5MRC|1|A|G|1750
*
5MRC|1|A|U|1799
5MRC|1|A|A|1800
5MRC|1|A|A|1801
5MRC|1|A|A|1802

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m