IL_5MRC_104

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GAU*AGAAC

Length

8 nucleotides

Bulged bases

5MRC|1|aa|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRC_104 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.5501

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5MRC|1|aa|G|297
5MRC|1|aa|A|298
5MRC|1|aa|U|299
*
5MRC|1|aa|A|310
5MRC|1|aa|G|311
5MRC|1|aa|A|312
5MRC|1|aa|A|313
5MRC|1|aa|C|314

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 66

mS45

Chain PP

bS16m

Chain VV

mS26