IL_5MRE_024

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCAAU*AAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_024 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.2534

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5MRE|1|A|G|787
5MRE|1|A|C|788
5MRE|1|A|A|789
5MRE|1|A|A|790
5MRE|1|A|U|791
*
5MRE|1|A|A|835
5MRE|1|A|A|836
5MRE|1|A|U|837
5MRE|1|A|C|838

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

uL5m

Chain K

uL16m