IL_5MRE_032

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

5MRE|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_032 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.2445

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

5MRE|1|A|C|1230
5MRE|1|A|A|1231
5MRE|1|A|U|1232
*
5MRE|1|A|A|1280
5MRE|1|A|U|1281
5MRE|1|A|A|1282
5MRE|1|A|G|1283

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 4

mL43

Chain D

uL4m

Chain J

uL15m