IL_5MRE_036

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUAAU*AGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_036 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0816

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5MRE|1|A|C|1364
5MRE|1|A|U|1365
5MRE|1|A|A|1366
5MRE|1|A|A|1367
5MRE|1|A|U|1368
*
5MRE|1|A|A|1397
5MRE|1|A|G|1398
5MRE|1|A|A|1399
5MRE|1|A|U|1400
5MRE|1|A|G|1401

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 3

mL41

Chain B

uL2m

Chain Y

bL34m