IL_5MRE_078

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5MRE|1|A|G|2843, 5MRE|1|A|A|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_078 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0909

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5MRE|1|A|C|2776
5MRE|1|A|U|2777
5MRE|1|A|C|2778
*
5MRE|1|A|G|2841
5MRE|1|A|U|2842
5MRE|1|A|G|2843
5MRE|1|A|A|2844
5MRE|1|A|G|2845

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain I

uL14m

Chain W

bL32m