IL_5MRE_083

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUAGUAC*GGACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_083 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1039

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|A|U|2919
5MRE|1|A|U|2920
5MRE|1|A|A|2921
5MRE|1|A|G|2922
5MRE|1|A|U|2923
5MRE|1|A|A|2924
5MRE|1|A|C|2925
*
5MRE|1|A|G|2930
5MRE|1|A|G|2931
5MRE|1|A|A|2932
5MRE|1|A|C|2933
5MRE|1|A|C|2934
5MRE|1|A|A|2935

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain F

uL6m