IL_5MRE_101

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAAUU*AGC

Length

8 nucleotides

Bulged bases

5MRE|1|aa|U|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_101 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2272

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5MRE|1|aa|G|130
5MRE|1|aa|A|131
5MRE|1|aa|A|132
5MRE|1|aa|U|133
5MRE|1|aa|U|134
*
5MRE|1|aa|A|235
5MRE|1|aa|G|236
5MRE|1|aa|C|237

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain PP

bS16m

Chain QQ

uS17m

Chain VV

mS26