IL_5MRE_104

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUUUAG*CAACGAUC

Length

14 nucleotides

Bulged bases

5MRE|1|aa|U|248, 5MRE|1|aa|C|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_104 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1804

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

5MRE|1|aa|G|246
5MRE|1|aa|U|247
5MRE|1|aa|U|248
5MRE|1|aa|U|249
5MRE|1|aa|A|250
5MRE|1|aa|G|251
*
5MRE|1|aa|C|282
5MRE|1|aa|A|283
5MRE|1|aa|A|284
5MRE|1|aa|C|285
5MRE|1|aa|G|286
5MRE|1|aa|A|287
5MRE|1|aa|U|288
5MRE|1|aa|C|289

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain LL

uS12m

Chain OO

uS15m

Chain QQ

uS17m