IL_5MRE_112

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUAU*AUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUAU,AUAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_112 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.387

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5MRE|1|aa|A|558
5MRE|1|aa|U|559
5MRE|1|aa|A|560
5MRE|1|aa|U|561
*
5MRE|1|aa|A|602
5MRE|1|aa|U|603
5MRE|1|aa|A|604
5MRE|1|aa|U|605

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain DD

uS4m