IL_5MRE_122

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAGUAA*UAAUAAUAA

Length

15 nucleotides

Bulged bases

5MRE|1|aa|U|768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_122 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1844

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5MRE|1|aa|U|748
5MRE|1|aa|A|749
5MRE|1|aa|G|750
5MRE|1|aa|U|751
5MRE|1|aa|A|752
5MRE|1|aa|A|753
*
5MRE|1|aa|U|765
5MRE|1|aa|A|766
5MRE|1|aa|A|767
5MRE|1|aa|U|768
5MRE|1|aa|A|769
5MRE|1|aa|A|770
5MRE|1|aa|U|771
5MRE|1|aa|A|772
5MRE|1|aa|A|773

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain KK

uS11m