IL_5MRE_129

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_129 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.4897

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

5MRE|1|aa|U|1018
5MRE|1|aa|A|1019
*
5MRE|1|aa|U|1258
5MRE|1|aa|A|1259
5MRE|1|aa|G|1260

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain II

uS9m

Chain MM

uS13m

Chain SS

uS19m

Chain bb

Transfer RNA; tRNA