IL_5MRE_134

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UCAUA

Length

7 nucleotides

Bulged bases

5MRE|1|aa|C|1232, 5MRE|1|aa|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_134 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.2464

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5MRE|1|aa|U|1104
5MRE|1|aa|G|1105
*
5MRE|1|aa|U|1231
5MRE|1|aa|C|1232
5MRE|1|aa|A|1233
5MRE|1|aa|U|1234
5MRE|1|aa|A|1235

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain JJ

uS10m

Chain NN

uS14m