IL_5MRE_142

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCA*UACA

Length

7 nucleotides

Bulged bases

5MRE|1|aa|C|1468, 5MRE|1|aa|C|1595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_142 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1332

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5MRE|1|aa|U|1467
5MRE|1|aa|C|1468
5MRE|1|aa|A|1469
*
5MRE|1|aa|U|1593
5MRE|1|aa|A|1594
5MRE|1|aa|C|1595
5MRE|1|aa|A|1596

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain bb

Transfer RNA; tRNA