IL_5MRE_143

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACUC*GAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_143 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1049

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MRE|1|aa|A|1469
5MRE|1|aa|C|1470
5MRE|1|aa|U|1471
5MRE|1|aa|C|1472
*
5MRE|1|aa|G|1589
5MRE|1|aa|A|1590
5MRE|1|aa|A|1591
5MRE|1|aa|A|1592
5MRE|1|aa|U|1593

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain bb

Transfer RNA; tRNA