IL_5MRE_159

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUAU*AUAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRE_159 not in the Motif Atlas

Geometric match to IL_9D9O_002

Geometric discrepancy: 0.3568

The information below is about IL_9D9O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5MRE|1|A|U|3161
5MRE|1|A|U|3162
5MRE|1|A|U|3163
5MRE|1|A|A|3164
5MRE|1|A|U|3165
*
5MRE|1|A|A|3240
5MRE|1|A|U|3241
5MRE|1|A|A|3242
5MRE|1|A|A|3243
5MRE|1|A|A|3244

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain C

uL3m

Chain L

bL17m

Chain M

bL19m