IL_5MRF_014

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GAAAG*CAGAUAGC

Length

13 nucleotides

Bulged bases

5MRF|1|A|G|692, 5MRF|1|A|G|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_014 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0688

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5MRF|1|A|G|583
5MRF|1|A|A|584
5MRF|1|A|A|585
5MRF|1|A|A|586
5MRF|1|A|G|587
*
5MRF|1|A|C|690
5MRF|1|A|A|691
5MRF|1|A|G|692
5MRF|1|A|A|693
5MRF|1|A|U|694
5MRF|1|A|A|695
5MRF|1|A|G|696
5MRF|1|A|C|697

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain D

uL4m

Chain J

uL15m