IL_5MRF_104

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GAU*AGAAC

Length

8 nucleotides

Bulged bases

5MRF|1|aa|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_104 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.55

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5MRF|1|aa|G|297
5MRF|1|aa|A|298
5MRF|1|aa|U|299
*
5MRF|1|aa|A|310
5MRF|1|aa|G|311
5MRF|1|aa|A|312
5MRF|1|aa|A|313
5MRF|1|aa|C|314

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 66

mS45

Chain LL

uS12m

Chain PP

bS16m

Chain VV

mS26