IL_5MRF_141

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

ACUC*GAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_141 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1048

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MRF|1|aa|A|1469
5MRF|1|aa|C|1470
5MRF|1|aa|U|1471
5MRF|1|aa|C|1472
*
5MRF|1|aa|G|1589
5MRF|1|aa|A|1590
5MRF|1|aa|A|1591
5MRF|1|aa|A|1592
5MRF|1|aa|U|1593

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain A

Large subunit ribosomal RNA; LSU rRNA