IL_5MRF_158

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UACAU*AUG

Length

8 nucleotides

Bulged bases

5MRF|1|aa|C|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRF_158 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.2578

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5MRF|1|aa|U|1099
5MRF|1|aa|A|1100
5MRF|1|aa|C|1101
5MRF|1|aa|A|1102
5MRF|1|aa|U|1103
*
5MRF|1|aa|A|1236
5MRF|1|aa|U|1237
5MRF|1|aa|G|1238

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain JJ

uS10m

Chain NN

uS14m

Chain XX

mS33