IL_5MRX_001

3D structure

PDB id

5MRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

27-nt SRL with a 5-hydroxymethyl cytidine modification

Experimental method

X-RAY DIFFRACTION

Resolution

0.85 Å

Loop

Sequence

U(5HM)C*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MRX_001 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1597

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5MRX|1|A|U|2650
5MRX|1|A|5HM|2651
5MRX|1|A|C|2652
*
5MRX|1|A|G|2668
5MRX|1|A|G|2669
5MRX|1|A|A|2670

Current chains

Chain A

RNA (27-MER)

Nearby chains