IL_5MY1_020

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

5MY1|1|A|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MY1_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1702

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5MY1|1|A|U|409
5MY1|1|A|G|410
5MY1|1|A|A|411
5MY1|1|A|A|412
5MY1|1|A|G|413
5MY1|1|A|A|414
5MY1|1|A|A|415
5MY1|1|A|G|416
*
5MY1|1|A|U|427
5MY1|1|A|G|428
5MY1|1|A|U|429
5MY1|1|A|A|430
5MY1|1|A|A|431
5MY1|1|A|A|432
5MY1|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain X

DNA-directed RNA polymerase subunit beta

Chain Y

DNA-directed RNA polymerase subunit beta'