IL_5MY1_026

3D structure

PDB id

5MY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli expressome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

5MY1|1|A|A|461

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MY1_026 not in the Motif Atlas

Geometric match to IL_5FJC_001

Geometric discrepancy: 0.2658

The information below is about IL_5FJC_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5MY1|1|A|A|460
5MY1|1|A|A|461
5MY1|1|A|G|462
*
5MY1|1|A|C|470
5MY1|1|A|U|471

Current chains

Chain A

16S ribosomal RNA

Nearby chains