IL_5NCO_021

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5NCO|1|A|G|801, 5NCO|1|A|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0954

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|G|674
5NCO|1|A|A|675
5NCO|1|A|A|676
5NCO|1|A|A|677
5NCO|1|A|C|678
*
5NCO|1|A|G|799
5NCO|1|A|A|800
5NCO|1|A|G|801
5NCO|1|A|A|802
5NCO|1|A|U|803
5NCO|1|A|A|804
5NCO|1|A|G|805
5NCO|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15