IL_5NCO_050

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5NCO|1|A|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_050 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0814

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5NCO|1|A|C|1208
5NCO|1|A|U|1209
5NCO|1|A|G|1210
5NCO|1|A|C|1211
5NCO|1|A|G|1212
5NCO|1|A|A|1213
5NCO|1|A|A|1214
5NCO|1|A|G|1215
*
5NCO|1|A|U|1234
5NCO|1|A|G|1235
5NCO|1|A|G|1236
5NCO|1|A|A|1237
5NCO|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20