IL_5NCO_059

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5NCO|1|A|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_059 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0946

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NCO|1|A|C|1437
5NCO|1|A|U|1438
5NCO|1|A|A|1439
5NCO|1|A|U|1440
*
5NCO|1|A|A|1551
5NCO|1|A|A|1552
5NCO|1|A|A|1553
5NCO|1|A|U|1554
5NCO|1|A|G|1555

Current chains

Chain A

23S rRNA

Nearby chains