IL_5NCO_061

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5NCO|1|A|U|1523

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_061 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0774

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NCO|1|A|U|1468
5NCO|1|A|A|1469
5NCO|1|A|A|1470
5NCO|1|A|G|1471
*
5NCO|1|A|U|1520
5NCO|1|A|G|1521
5NCO|1|A|A|1522
5NCO|1|A|U|1523
5NCO|1|A|G|1524

Current chains

Chain A

23S rRNA

Nearby chains