IL_5NCO_062

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_062 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1051

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NCO|1|A|U|1474
5NCO|1|A|G|1475
5NCO|1|A|U|1476
5NCO|1|A|A|1477
5NCO|1|A|G|1478
*
5NCO|1|A|U|1513
5NCO|1|A|G|1514
5NCO|1|A|A|1515
5NCO|1|A|G|1516
5NCO|1|A|G|1517

Current chains

Chain A

23S rRNA

Nearby chains