IL_5NCO_119

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUC*GUAG

Length

7 nucleotides

Bulged bases

5NCO|1|1|U|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_119 not in the Motif Atlas

Geometric match to IL_7ECP_004

Geometric discrepancy: 0.19

The information below is about IL_7ECP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5NCO|1|1|U|15
5NCO|1|1|U|16
5NCO|1|1|C|17
*
5NCO|1|1|G|93
5NCO|1|1|U|94
5NCO|1|1|A|95
5NCO|1|1|G|96

Current chains

Chain 1

4.5S SRP RNA (Ffs)

Nearby chains

Chain l

Signal recognition particle receptor FtsY