IL_5NCO_123

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_123 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|G|1666
5NCO|1|A|G|1667
5NCO|1|A|A|1668
5NCO|1|A|A|1669
5NCO|1|A|C|1670
5NCO|1|A|U|1671
5NCO|1|A|A|1672
5NCO|1|A|G|1673
5NCO|1|A|G|1674
*
5NCO|1|A|C|1990
5NCO|1|A|U|1991
5NCO|1|A|G|1992
5NCO|1|A|U|1993
5NCO|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14