IL_5NCO_124

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NCO_124 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NCO|1|A|U|1851
5NCO|1|A|U|1852
5NCO|1|A|A|1853
5NCO|1|A|A|1854
5NCO|1|A|U|1855
5NCO|1|A|U|1856
5NCO|1|A|G|1857
5NCO|1|A|A|1858
5NCO|1|A|U|1859
5NCO|1|A|G|1860
*
5NCO|1|A|U|1882
5NCO|1|A|U|1883
5NCO|1|A|G|1884
5NCO|1|A|A|1885
5NCO|1|A|U|1886
5NCO|1|A|C|1887
5NCO|1|A|G|1888
5NCO|1|A|A|1889
5NCO|1|A|A|1890
5NCO|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains