IL_5ND8_015

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_015 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.165

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5ND8|1|A|U|649
5ND8|1|A|U|650
5ND8|1|A|A|651
5ND8|1|A|A|652
5ND8|1|A|G|653
*
5ND8|1|A|U|663
5ND8|1|A|G|664
5ND8|1|A|G|665
5ND8|1|A|A|666
5ND8|1|A|G|667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15