IL_5ND8_017

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5ND8|1|A|G|846, 5ND8|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1648

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5ND8|1|A|G|719
5ND8|1|A|A|720
5ND8|1|A|A|721
5ND8|1|A|A|722
5ND8|1|A|C|723
*
5ND8|1|A|G|844
5ND8|1|A|A|845
5ND8|1|A|G|846
5ND8|1|A|A|847
5ND8|1|A|U|848
5ND8|1|A|A|849
5ND8|1|A|G|850
5ND8|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15