IL_5ND8_021
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5ND8|1|A|C|821, 5ND8|1|A|A|833, 5ND8|1|A|A|834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_021 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.1683
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5ND8|1|A|G|820
5ND8|1|A|C|821
5ND8|1|A|G|822
*
5ND8|1|A|C|832
5ND8|1|A|A|833
5ND8|1|A|A|834
5ND8|1|A|U|835
5ND8|1|A|C|836
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L2
- Chain F
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L22
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