IL_5ND8_037

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5ND8|1|A|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_037 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1734

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5ND8|1|A|G|1075
5ND8|1|A|A|1076
5ND8|1|A|U|1077
5ND8|1|A|G|1078
*
5ND8|1|A|C|1165
5ND8|1|A|G|1166
5ND8|1|A|C|1167

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain P

50S ribosomal protein L16