IL_5ND8_047

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5ND8|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_047 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1835

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5ND8|1|A|G|1356
5ND8|1|A|G|1357
5ND8|1|A|A|1358
5ND8|1|A|A|1359
5ND8|1|A|G|1360
*
5ND8|1|A|C|1368
5ND8|1|A|G|1369
5ND8|1|A|C|1370

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L22