IL_5ND8_062

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_062 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.2862

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5ND8|1|A|U|1757
5ND8|1|A|A|1758
5ND8|1|A|G|1759
*
5ND8|1|A|C|1770
5ND8|1|A|A|1771
5ND8|1|A|G|1772

Current chains

Chain A

23S ribosomal RNA

Nearby chains