IL_5ND8_069

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_069 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1974

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5ND8|1|A|A|1883
5ND8|1|A|G|1884
5ND8|1|A|G|1885
5ND8|1|A|A|1886
5ND8|1|A|G|1887
*
5ND8|1|A|C|1909
5ND8|1|A|G|1910
5ND8|1|A|A|1911
5ND8|1|A|A|1912
5ND8|1|A|U|1913

Current chains

Chain A

23S ribosomal RNA

Nearby chains