IL_5ND8_097
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5ND8|1|A|G|2807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_097 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.1364
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5ND8|1|A|U|2663
5ND8|1|A|U|2664
5ND8|1|A|G|2665
5ND8|1|A|A|2666
5ND8|1|A|G|2667
*
5ND8|1|A|C|2801
5ND8|1|A|A|2802
5ND8|1|A|A|2803
5ND8|1|A|G|2804
5ND8|1|A|A|2805
5ND8|1|A|U|2806
5ND8|1|A|G|2807
5ND8|1|A|A|2808
5ND8|1|A|G|2809
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
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