IL_5ND8_098

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_098 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1839

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5ND8|1|A|U|2679
5ND8|1|A|U|2680
5ND8|1|A|A|2681
5ND8|1|A|G|2682
5ND8|1|A|U|2683
5ND8|1|A|A|2684
5ND8|1|A|C|2685
*
5ND8|1|A|G|2690
5ND8|1|A|G|2691
5ND8|1|A|A|2692
5ND8|1|A|C|2693
5ND8|1|A|C|2694
5ND8|1|A|G|2695

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6