IL_5ND8_102

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5ND8|1|A|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_102 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1275

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5ND8|1|A|G|2764
5ND8|1|A|A|2765
5ND8|1|A|U|2766
5ND8|1|A|A|2767
5ND8|1|A|A|2768
5ND8|1|A|G|2769
*
5ND8|1|A|U|2789
5ND8|1|A|G|2790
5ND8|1|A|A|2791
5ND8|1|A|A|2792
5ND8|1|A|G|2793
5ND8|1|A|C|2794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L13