IL_5ND8_103

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUU*AAUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_103 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.384

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5ND8|1|A|G|2858
5ND8|1|A|G|2859
5ND8|1|A|U|2860
5ND8|1|A|U|2861
*
5ND8|1|A|A|2896
5ND8|1|A|A|2897
5ND8|1|A|U|2898
5ND8|1|A|A|2899
5ND8|1|A|C|2900

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19