IL_5ND8_112

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_112 not in the Motif Atlas

Homologous match to IL_7A0S_107

Geometric discrepancy: 0.4304

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5ND8|1|B|G|77
5ND8|1|B|C|78
5ND8|1|B|C|79
*
5ND8|1|B|G|92
5ND8|1|B|C|93
5ND8|1|B|U|94

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16

Chain Y

50S ribosomal protein L25