IL_5ND8_122

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5ND8|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1885

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5ND8|1|a|G|147
5ND8|1|a|G|148
5ND8|1|a|A|149
5ND8|1|a|U|150
5ND8|1|a|A|151
5ND8|1|a|A|152
5ND8|1|a|C|153
*
5ND8|1|a|G|168
5ND8|1|a|C|169
5ND8|1|a|U|170
5ND8|1|a|A|171
5ND8|1|a|A|172
5ND8|1|a|U|173
5ND8|1|a|A|174
5ND8|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20